石崎のResearchmap[reseachmap Link]

原著論文・レビュー・和文総説

[2024]
• Solé-Gil, A., Sakai, Y., Catarino, B., Jones, V.A.S., Youngstrom, C.E., Jordà-Segura, J., Cheng, C.-L., Dolan, L., Ambrose, B.A., Ishizaki, K., Blázquez , M.A. and Aqusti, J.
  Divergent evolution of a thermospermine-dependent regulatory pathway in land plants
  Developmental Cell, in press: [Journal Link]
  

[2024]
• Yamamoto-Negi, Y., Higa, T., Komatsu, A., Sasaki, K., Ishizaki, K., Nishihama, R., Gotoh, E., Kohchi, T. and Suetsugu, N.
  A kinesin-like protein, KAC, is required for light-induced and actin-based chloroplast movement in Marchantia polymorpha
  Plant and Cell Physiology 65: 1787-1800.[Journal Link]
  
• Sakai, Y., Ueno, A., Yonetsuka, H., Goh, T., Kato, H., Kondo, Y., Fukaki, H. and Ishizaki, K.
  Regulation of ROP GTPase cycling between active and inactive states is essential for vegetative organogenesis in Marchantia polymorpha
  Development 151: dev202928. [Journal Link]
  
• Shimizu, S., Hori, K., Ishizaki, K., Ohta, H. and Shimojima, M.
  SENSITIVE TO FREEZING2 is crucial for growth of Marchantia polymorpha under acidic conditions
  Journal of Plant Research 137: 1115-1126. [Journal Link]
  
• Furuya, T., Saegusa, M., Yamaoka, S., Tomita, Y., Minamino, N., Niwa, M., Inoue, K., Yamamoto, C., Motomura, K., Shimadzu, S., Nishihama, R., Ishizaki, K., Ueda, T., Fukaki, H., Fukuda, H., Kasahara, M., Araki, T. and Kondo, Y.
  A non-canonical BZR/BES transcription factor regulates the development of haploid reproductive organs in Marchantia polymorpha
  Nature Plants 10: 785-797. [Journal Link]
  
• Uzaki, M., Mori, T., Sato, M., Wakazaki, M., Yamamoto, K., Takeda-Kamiya, N., Murakami, A., Guerrero, D., Shichijo, C., Ohnishi, M., Ishizaki, K. Fukaki, H., O’Connar, S., Toyooka, K., Mimura, T. and Hirai, M.
  Integration of cell differentiation and initiation of monoterpenoid indole alkaloid metabolism in seed germination of Catharanthus roseus
  New Phytologist 242: 1156-1171. [Journal Link]
  

[2023]
• Shimojo, M., Nakamura, M., Kutaura, G., Ihara, Y., Shimizu, S., Hori, K., Iwai, M., Ohta, H., Ishizaki, K. and Shimojima, M.
  Phosphatidic acid phosphohydrolase modulates glycerolipid synthesis in Marchantia polymorpha and is crucial for growth under both nutrient-replete and -deficient conditions
  Planta 258: 92. [Journal Link]
  
• Goto, C., Ikegami, A., Goh, T., Maruyama K., Kasahara, H., Takebayashi, Y., Kamiya, Y., Toyokura, K., Kondo, Y., Ishizaki, K., Mimura, T. and Fukaki, H.
  Genetic interaction between Arabidopsis SUR2/CYP83B1 and GNOM indicates the importance of stabilizing local auxin accumulation in lateral root initiation
  Plant and Cell Physiology 64: 1178-1188. [Journal Link]
  
• Hatada, M., Akiyama, R., Yamagishi, M., Ishizaki, K. and Mizutani, M.
  MpDWF5A-encoded sterol Δ7-reductase is essential for the normal growth and development of Marchantia polymorpha
  Plant and Cell Physiology 64: 826-838. [Journal Link]
  
• Narutaki, A., Kahar, P., Shimadzu, S., Maeda, S., Furuya, T., Ishizaki, K., Fukaki, H., Ogino, C. and Kondo, Y.
  Sugar sensing contributes to the maintenance of vascular cambium by inhibiting cell differentiation
  Plant and Cell Physiology 64: 1511-1522 [Journal Link]
  
• Nobiza, K., Shinozawa, A., Takahashi, K., Matsuura, H., Jahan, A., Islam, M., Karim, M.M., Sk, R., Yoshikawa, M., Ishizaki, K., Sakata, Y. and Takezawa, D.
  Abscisic acid-mediated sugar responses are essential for vegetative desiccation tolerance in the liverwort Marchantia polymorpha
  Physiologia Plantarum 175: e13898 [Journal Link]
  
• Leong, R., Tan, J., Shuxian, Koh, S.S., Wu, T.-T., Ishizaki, K., and Urano, D.
  G protein signaling and metabolic pathways as evolutionarily conserved mechanisms to conbat calcium deficiency>
  New Phytologist 237: 615-630, doi.org/10.1111/nph.18561[Journal Link]
  

[2022]
• Wu, T.-T., Krishnamoorthi, S., Boonyaves, K., Al-Darabsah, I., Leong, R., Jones, A.M., Ishizaki, K., Liao, K.-L., and Urano, D.
  G protein controls stress readiness by modulating transcriptional and metabolic homeostasis in Arabidopsis thaliana and Marchantia
  Molecular Plant 15: 1889-1907, doi.org/10.1016/j.molp.2022.10.020[Journal Link]
  
• Aki, S.S., Morimoto, T., Ohnishi, T., Oda, A., Kato, H., Ishizaki, K., Nishihama, R., Kohchi, T., and Umeda, M.
  R2R3-MYB transcription factor GEMMA CUP-ASSOCIATED MYB1 mediates the cytokinin signal to achieve proper organ development in Marchantia
  Scientific Reports 12: 21123, doi.org/10.1038/s41598-022-25684-3[Journal Link]
  
• Bowman, J.L., Arteaga-Vazquez, M., Berger, F., Briginshaw, L.N., Carella, P., Aguilar-Cruz, A., Davis, K.M., Dierschke, T., Dolan, L., Dorantes-Acosta, A.E., Fisher, T.J., Flores-Sandoval, E., Futagami, K., Ishizaki, K., Jibran, R., Kanazawa, T., Kato, H., Kohchi, T., Levins, J., Lin, S-S., Nakagami, H., Nishihama, R., Romani, F., Schornack, S., Tanizawa, Y., Tsuzuki, M., Ueda, T., Watanabe, Y., Yamato, K.T. and Zachgo, S.
  The renaissance and enlightment of Marchantia as a model system
  The Plant Cell 34: 3512-3542, doi.org/10.1093/plcell/koac219[Journal Link]
  
• Jahan, A., Yamazaki, Y., Islam, M., Ghosh, T.K., Yoshimura, N., Kato, H., Ishizaki, K., Shinozawa, A., Sakata, Y. and Takezawa, D.
  Dirrerential regulations of abscisic acid-induced desiccation tolerance and vegetative dormancy by group B3 Raf kinases in liverworts
  Frontiers in Plant Science 13: 952820, doi: 10.3389/fpls.2022.952820 [Journal Link]
  
• Imran, S., Oyama, M., Horie, R., Kobayashi, I.N., Costa, A., Kumano, R., Hirata, C., Houng Tran, S.T., Katsuhara, M., Tanoi, K., Kohchi, T., Ishizaki, K. and Horie, T.
  Distinct functions of the atypical terminal hydrophilic domain of the HKT transporter in the liverwort Marchantia polymorpha
  Plant and Cell Physiology 63: 802-816, doi:10.1093/pcp/pcac044 [Journal Link]
  
• Kurita, Y., Kanno, S., Sugita, R., Hirose, A., Ohnishi, M., Tezuka, A., Deguchi, A., Ishizaki, K., Fukaki, H., Baba, K., Nagano, A.J., Tanoi, K., Nakanishi, T. and Mimura, T.
  Visualization of phosphorus re-translocation and phosphate transporter expression profiles in a shortened annual cycle system of poplar
  Plant and Cell Environment 45: 1749-1764, doi:10.1111/pce.14319 [Journal Link]
  
• Sakai, Y., Higaki, T., Ishizaki, K., Nishihama, R., Kohchi, T. and Hasezawa, S.
  Migration of prospindle before the first asymmetric division in germinating spore of Marchantia polymorpha
  Plant Biotechnology 39: 5-12, doi:10.5511/plantbiotechnology.21.1217b [Journal Link]
  
• Furuya, T., Nishihama, R., Ishizaki, K., Kohchi, T., Fukuda, H. and Kondo, Y.
  A glycogen synthase kinase 3-like kinase MpGSK regulates cell differentiation in Marchantia polymorpha
  Plant Biotechnology 39: 65-72, doi:10.5511/plantbiotechnology.21.1219a [Journal Link]
  
• Uzaki, M., Yamamoto, K., Murakami, A., Fuji, Y., Ohnishi, M., Ishizaki, K., Fukaki, H., Hirai, M.Y. and Mimura, T.
  Differential regulation of fluorescent alkaloid metabolism between idioblast and laticifer cells during leaf development in Catharanthus roseus seedlings
  Journal of Plant Research 135: 473-483, doi:10.1007/s10265-022-01380-1 [Journal Link]
  

[2021]
• Mizuno, Y., Komatsu, A., Shimazaki, S., Naramoto, S., Inoue, K., Xie, X., Ishizaki, K., Kohchi, T. and Kyoduka, J.
  Major components of the KARRIKIN INSENSITIVE2-dependent signaling pathway are conserved in the liverwort Marchantia polymorpha
  Plant Cell 33: 2395-2411 [Journal Link]
  
• Kohchi, T., Yamato, K.T., Ishizaki, K., Yamaoka, S. and Nishihama, R.
  Development and molecular genetics of Marchantia polymorpha
  Annual Reviews in Plant Biology 72: 677-702 [Journal Link]
  

[2020]
• Rico-Reséndiz, F., Cervantes-Pérez, A.S., Espinal-Centeno, A., Dipp-Álvarez, M., Oropeza-Aburto, A., Hurtado-Bautista, E., Cruz-Hernández, A., Bowman, J.L., Ishizaki, K., Arteaga-Vázquez, M.A., Herrera-Estrella, L. and Cruz-Ramírez, A.
  Transcriptional and morpho-Physiological responses of Marchantia polymorpha upon phosphate starvation
  International Journal of Molecular Sciences 21: 8354 [Journal Link]
  
• Sakai, S., Hirata, C., Sakai, Y., Kazama, T., Abe, T. and Ishizaki, K.
  Isolation of morphological mutants in a bryophyte model Marchantia polymorpha using heavy-ion mutagenesis
  RIKEN Accelerator Progress Report 53: 203 [Journal Link]
  
• Kato, H., Yasui, Y. and Ishizaki, K.
  Gemma cup and gemma development in Marchantia polymorpha
  New Phytologist 228: 459-465 [Journal Link]
  
• Hirakawa, Y., Fujimoto, T., Ishida, S., Uchida, N., Sawa, S., Kiyosue, T., Ishizaki, K., Nishihama, R., Kohchi, T. and Bowman, J.L.
  Induction of multichotomous branching by CLAVATA peptide in Marchantia polymorpha
  Current Biology 30: 3833-3840 [Journal Link][プレスリリース]
  
• Wachananawat, B., Kuroha, T., Takenaka, Y., Kajura, H., Naramoto, S., Yokoyama, R., Ishizaki, K., Nishitani, K. and Ishimizu, T.
  Diversity of pectin rhamnogalacturonan I rhamnosyltransferases in glycosyltransferase family 106
  Fronteirs in Plant Science 11: 997 [Journal Link]
  
• Kato, H., Mutte, S.K., Suzaki, H., Crespo, I., Das, S., Redoeva, T., Fontana, M., Yoshitake, Y., Haniwa, E., van den Berg, W., Lindhoud, S., Ishizaki, K., Hohlbein, J., Borst, J.W., Boer, D.R., Nishihama, R., Kohchi, T. and Weijers, D.
  Design principles of a minimal auxin response system
  Nature Plants 6: 473-482 [Journal Link][プレスリリース]
  
• Naramoto, S., Jones, V.A.S., Trozzi, N., Sato, M., Toyooka, K., Shimamura, M., Ishida, S., Nishitani, K., Ishizaki, K., Nishihama, R., Kohchi, T., Dolan, L. and Kyozuka, J.
  A conserved regulatory mechanism mediates the convergent evolution of plant shoot lateral organs
  PLoS Biology 17: e3000560 [Journal Link]
• 安居佑季子、石崎公庸
  庭の厄介者ゼニゴケがクローン個体をつくり繁殖する仕組み
  化学と生物　第58巻第9号: 502-504 [Journal Link]

[2019]
• *Yasui, Y., *Tsukamoto, S., Sugaya, T., Nishihama, R., Wang, Q., Kato, H., Yamato, K.T., Fukaki, H., Mimura, T., Kubo, H., Theres, K., Kohchi, T. and Ishizaki, K.
  GEMMA CUP-ASSOCIATED MYB1, an orthologue of axillary meristem regulators, is essential for vegetative reproduction in a liverwort Marchantia polymorpha
  Current Biology 29: 3987-3995. [Journal Link][プレスリリース]
  *These authors contributed equally to this work.
  
• Hiwatashi, H., Goh, H., Yasui, Y., Koh, L.Q., Takami, H., Kajikawa, M., Kirita, H., Kanazawa, T., Minamino, N., Togawa, T., Sato, M., Wakazaki, M., Yamaguchi, K., Shigenobu, S., Fukaki, H., Mimura, T., Toyooka, K., Sawa, S., Yamato, K.T., Ueda, T., Urano, D., Kohchi, T. and Ishizaki, K.
  The RopGEF KARAPPO is essential for the initiation of vegetative reproduction in Marchantia polymorpha
  Current Biology 29: 3525-3531.[Journal Link][プレスリリース]
  
• Yamamoto, K., Takahashi, K., Caputi, L., Mizuno, H., Rodriguez-Lopez, C.E., Iwasaki, T., Ishizaki, K., Fukaki, H., Ohnishi, M., Yamazaki, M., Masujima, T., O'Connor, S.E. and Mimura, T.
  The complexity of intercellular localisation of alkaloids revealed by single-cell metabolomics.
  New Phytologist 224: 848-859 [Journal Link]
• Aki, S.S., Mikami, T., Naramoto, S., Nishihama, R., Ishizaki, K., Kojima, M., Takebayashi, Y., Sakakibara, H., Kyozuka, J., Kohchi, T. and Umeda, M.
  Cytokinin Signaling Is Essential for Organ Formation in Marchantia polymorpha
  Plant Cell Physiology 60: 1842-1854 [Journal Link]
• Hirakawa, Y., Uchida, N., Yamaguchi, Y.L., Tabata, R., Ishida, S., Ishizaki, K., Nishihama, R., Kohchi, T., Sawa, S. and Bowman, J.L.
  Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha
  PLoS Genetics 15: e1007997 [Journal Link]
• Kondou, Y., Miyagi, Y., Morito, T., Fujihara, K., Miyauchi, W., Moriyama, A., Terasawa, T., Ishida, S., Iwabuchi, K., Kubo, H., Nishihama, R., Ishizaki, K. and Kohchi, T.
  Physiological function of photoreceptor UVR8 in UV-B tolerance in the liverwort Marchantia polymorpha
  Planta 249: 1349-1369. [Journal Link]

[2018]
• Higo, A., Kawashima, T., Borg, M., Zhao, M., Lopez-Vidriero, I., Sakayama, H., Montgomery, S.A., Sekimoto, H., Hackenberg, D., Shimamura, M., Nishiyama, T., Sakakibara, K., Tomita, Y., Togawa, T., Kunimoto, K., Osakabe, A., Suzuki, Y., Yamato, K.T., Ishizaki, K., Nishihama, R., Kohchi, T., Franco-Zorrilla, J.M., Twell, D., Berger, F. and Araki, T.
  Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants
  Nature Communications 9: 5283 [Journal Link]
• Eklund, D.M., Kanei, M., Flores-Sandoval, E., Ishizaki, K., Nishihama, R., Kohchi, T., Lagercrantz, U., Bhalerao, R.P., Sakata, Y., and Bowman, J.L.
  An evolutionary conserved abscisic acid signaling pathway regulates dormancy in the liverwort Marchantia polymorpha
  Current Biology 28: 3691-3699 [Journal Link]
• Togawa, T., Adachi, T., Harada, D., Mitani, T., Tanaka, D., Ishizaki, K., Kohchi, T. and Yamato, K.T.
  Cryopreservation of Marchantia polymorpha spermatozoa
  Journal of Plant Research 131: 1047-1054 [Journal Link]
• Shimakawa, G., Ifuku, K., Suzuki,Y., Makino, A., Ishizaki, K., Fukayama, H., Morita, R., Sakamoto, K., Nishi, A. and Miyake, C.
  Responses of the chloroplast glyoxalase system to high CO2 concentrations
  Bioscience, Biotechnology, and Biochemistry 82: 2072-2083. [Journal Link]
• Kubo, H., Nozawa, S., Hiwatashi,T., Kondou, Y., Nakabayashi, R., Mori, T., Saito, K., Takanashi, K., Kohchi, T. and Ishizaki, K.
  Biosynthesis of riccionidins and marchantins is regulated by R2R3-MYB transcription factors in Marchantia polymorpha
  Journal of Plant Research 131: 849-864. [Journal Link]
• Otani, K., Ishizaki, K., Nishihama, R., Takatani, S., Kohchi, T., Takahashi, T. and Motose, H.
  An evolutionarily conserved NIMA-related kinase directs rhizoid tip growth in the basal land plant Marchantia polymorpha
  Development 145: dev154617 [Journal Link]
• Yamaoka, S., Nishihama, R., Yoshitake, Y., Ishida, S., Inoue, K., Saito, M., Okahashi, K., Bao, H., Nishida, H., Yamaguchi, K., Shigenobu, S., Ishizaki, K., Yamato, K.T., and Kohchi, T.
  Generative cell specification requires transcription factors evolutionarily conserved in land plants
  Current Biology 28: 479-486 [Journal Link]

[2017]
• Bowman, J.L., Kohchi, T., Yamato, K.T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S.S., Althoff, F., Araki, T., Arteaga-Vazquez, M.A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C.R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K.M., Deimans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A.E., Eklund, D.M., Florent, S.N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik,B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A.J., Higo, A., Hirakawa, Y., Hundley, H.N., Ikeda, Y., Inoue, K., Inoue, S.I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S.S., Lindquist, E., Lipzen, A.M., Lu, C.W., De Luna, E., Martienssen, R.A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rovekamp, M., Sano, R., Sawa, S., Schmid, M.W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M., Takezawa, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, J.M., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S., and Schmutz, J.
  Insights into land plant evolution gernered from the Marchantia polymorpha genome.
  Cell 171: 287-304 [Journal Link]
• Kato, H., Kouno, M., Takeda, M., Suzuki, H., Ishizaki, K., Nishihama, R., and Kohchi, T.
  The role of the sole activator-type Auxin Response Factor in pattern formation of Marchantia polymorpha.
  Plant Cell Physiol. 58: 1642-1651 [Journal Link]
• Takagi, D., Amako, K., Hashiguchi, M., Fukaki, H., Ishizaki, K., Tatsuaki, G., Fukao, Y., Sano, R., Kurata, T., Demura, T., Sawa, S., and Miyake, C.
  Chloroplastic ATP synthase builds up proton motive force for preventing reactive oxygen species production in photosystem I.
  Plant J., 91: 306-324 [Journal Link]
• Hanawa, H., Ishizaki, K., Nohira, K., Takagi, D., Shimakawa, G., Sejima, T., Shaku, K., Makino, A., and Miyake, C.
  Land plants drive photorespiration as higher electron-sink: comparative study of post-illumination transient O2-uptake rates from liverworts to angiosperms through ferns and gymnosperms.
  Physiologia Plantarum, 161: 138-149 [Journal Link]
• Takagi, D., Ishizaki, K., Hanawa, H., Mabuchi, T., Shimakawa, G., Yamamoto, H., and Miyake, C..
  Diversity of strategies for escaping reactive oxygen species production within photosystem I among land plants: P700 oxidation system is prerequisite for alleviating photoinhibition in photosystem I.
  Physiologia Plantarum 161: 56-74 [Journal Link]
• Nagaoka, N., Yamashita, A., Kurisu, R., Watari, Y., Ishizuna, F., Tsutsumi, N., Ishizaki, K., Kohchi, T., and Arimura, S.
  DRP3 and ELM1 are required for mitochondrial fission in the liverwort Marchantia polymorpha.
  Scientific Reports 4: 4600 [Journal Link]
• Kurita, Y., Baba, K., Ohnishi, M., Matsubara, R., Kosuge, K., Anegawa, A., Shichijo, C., Ishizaki, K, Kaneko, Y., Hayashi, M., Suzaki, T., Fukaki, H., and Mimura, T.
  Inositol hexakis phosphate is the seasonal phosphorus reservoir in the deciduous woody plant Populus alba L.
  Plant Cell Physiol. 58: 1477-1485 [Journal Link]
• Minamino, N., Kanazawa, T., Nishihama, R., Yamato, K.T., Ishizaki, K., Kohchi, T., Nakano, A. and Ueda, T.
  Dynamic reorganization of the endomembrane system during spermatogenesis in Marchantia polymorpha.
  J. Plant Res. 130: 433-441 [Journal Link]
• Yokota, T., Ohnishi, T., Shibata, K., Asahina, M., Nomura, T., Fujita, T., Ishizaki, K., and Kohchi, T.
  Occurrence of brassinosteroids in non-flowering land plants, liverwort, moss, lycophyte and fern.
  Phytochemistry 136: 46-55 [Journal Link]
• Shimakawa, G., Ishizaki, K., Tsukamoto, S., Tanaka, M., Sejima, T. and Miyake, C.
  The liverwort, Marchantia, drives alternative electron flow using a flavodiiron protein to protect PSI.
  Plant Physiol. 173: 1636-1647 [Journal Link]
• Ishizaki, K.
  Evolution of land plants: insights from molecular studies on basal lineages.
  Biosci. Biotechnol. Biochem. 81: 73-80. [Journal Link]

[2016]
• Koi, S., Hisanaga, T., Sato, K., Shimamura, M., Yamato, K.T., Ishizaki, K., Kohchi, T. and Nakajima, K.
  An evolutionary conserved plant RKD factor controls germ cell differentiation.
  Curr. Biol. 26: 1775-1781. [Journal Link]
• Inoue, K., Nishihama, R., Kataoka, H., Hosaka, M., Manabe, R., Nomoto, M., Tada, Y., Ishizaki, K. and Kohchi, T.
  Phytochrome signaling is mediated by PHYTOCHROME INTERACTING FACTOR in the liverwort Marchantia polymorpha.
  Plant Cell 28: 1406-1421. [Journal Link]
• Yamamoto, K., Takahashi, K., Mizuno, H., Anegawa, A., Ishizaki, K., Fukaki, H., Ohnishi, M., Yamazaki, M., Masujima, T., Mimura, T..
  Cell-specific localization of alkaloids in Catharanthus roseus stem tissue measured with Imaging MS and Single-cell MS.
  Proc. Natl. Acad. Sci. U.S.A. 113: 3891-3896. [Journal Link]
• Lo, J.C., Tsednee, M., Yang, S.C., Hu, J.M., Ishizaki, K., Kohchi, T., Lee, D.C. and Yeh, K.C.
  Evolutionary analysis of iron (Fe) acquisition system in Marchantia polymorpha.
  New Phytologist 211: 569-583. [Journal Link]
• Ghosh, TK., Kaneko, M., Akter, K., Murai, S., Komatsu, K., Ishizaki, K., Yamato, K.T., Kohchi, T. and Takezawa, D.
  Abscisic acid-induced gene expression in the liverwort Marchantia polymorpha is mediated by evolutionarily conserved promoter elements.
  Physiol. Plant. 156: 407-420. [Journal Link]
• Ishizaki, K., Nishihama, R., Yamato, K.T. and Kohchi, T.
  Molecular genetic tools and techniques for Marchantia polymorpha research.
  Plant Cell Physiol. 57:262-270. [Journal Link]
• Kanazawa, T., Era, A., Minamino, N., Shikano, Y., Fujimoto, M., Uemura, T., Nishihama, R., Yamato, K.T., Ishizaki, K., Nishiyama, T., Kohchi, T., Nakano, A. and Ueda, A.
  SNARE molecules in Marchantia polymorpha.: unique and conserved feature of the membrane fusion machinery.
  Plant Cell Physiol. 57: 307-324. [Journal Link]
• Higo, A., Niwa, M., Yamato, K.T., Yamada, L., Sawada, H., Sakamoto, T., Kurata, T., Shirakawa, M., Endo, M., Shigenobu, S., Yamaguchi, K., Ishizaki, K., Nishihama, R., Kohchi, T. and Araki, T..
  Transcriptional framework of male gametogenesis in the liverwort Marchantia polymorpha L.
  Plant Cell Physiol. 57: 325-338. [Journal Link]
• Bowman, J.L., Araki, T., Arteaga-Vazquez, M.A., Berger, F., Dolan, L., Haseloff, J., Ishizaki, K., Kyozuka, K., Lin, S.S., Nagasaki, H., Nakagami, H., Nakajima, K., Nakamura, Y., Ohashi-Ito, K., Sasa, S., Shimamura, M., Solano, R., Tsukaya, H., Ueda, T., Watanabe, Y., Yamato, K.T., Zachgo, S. and Kohchi, T.
  The naming of names: guidelines for gene nomemclature in Marchantia.
  Plant Cell Physiol. 57: 257-261. [Journal Link]
• Tsuzuki, M., Nishihama, R., Ishizaki, K., Kurihara, Y., Matsui, M., Bowman, J.L., Kohchi, T., Hamada, T. and Watanabe Y.
  Profiling and characterization of small RNAs in the liverwort, Marchantia polymorpha, belonging to the first diverged land plants.
  Plant Cell Physiol. 57: 359-372. [Journal Link]
• Lin, P.C., Lu, C.W., Shen, B.N., Lee, G.Z., Bowman, J.L., Arteaga-Vazquez, M.A., Liu, L.Y.D., Hong, S.F., Lo, C.F., Su, G.M., Kohchi, T., Ishizaki, K., Zachgo, S., Althoff, F., Takenaka, M., Yamato, K.T. and Lin, S.S.
  Identification of miRNAs and their targets in the liverwort Marchantia polymorpha by integrating RNA-seq and degradome analysis.
  Plant Cell Physiol. 57: 339-358. [Journal Link]
• Tanaka, D., Ishizaki, K., Kohchi, T. and Yamato, K.T.
  Cryopreservation of gemmae from the liverwort Marchantia polymorpha L.
  Plant Cell Physiol. 57: 300-306. [Journal Link]
• Proust, H., Honkanen, S., Jones, V.A., Morieri, G., Prescott, H., Kelly, S., Ishizaki, K., Kohchi, T. and Dolan, L.
  RSL class I genes controlled the development of epidermal structures in the common ancestor of land plants.
  Current Biol. 26: 93-99. [Journal Link]
• 石崎公庸、榊原恵子
  巻頭言：古い酒を新しい革袋に〜preexisting gene regulatory networkの転用による陸上植物のボディプラン革新〜−
  植物科学の最前線　第7巻「古い酒を新しい革袋に〜preexisting gene regulatory networkの転用による陸上植物のボディプラン革新」: 47-54 [Journal Link]

[2015]
• Ishizaki, K., Nishihama, R., Ueda, M., Inoue, K., Ishida, S., Nishimura, Y., Shikanai, T. and Kohchi, T.
  Development of Gateway binary vector series with four different selection markers for the liverwort Marchantia polymorpha.
  PLoS One 10: e0138876. [Journal Link]
• Ishizaki, K.
  Development of schizogenous intercellular spaces in plants.
  Front. Plant Sci. 6: 497. [Journal Link]
• Koeduka, T., Ishizaki, K., Mwenda, C.M., Hori, K., Sasaki-Sekimoto, Y., Ohta, H., Kohchi, T. and Matsui, K.
  Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium faccidum provides insight into the evolutionary divergence of the plant CYP74 family.
  Planta 242: 1175-1186. [Journal Link]
• Eklund, D.M., Ishizaki, K., Flores-Sandoval, E., Kikuchi, S., Takebayashi, Y., Tsukamoto, S., Hirakawa, Y., Nonomura, M., Kato, H., Kouno, M., Bhalerao, R.P., Lagercrantz, U., Kasahara, H., Kohchi, T. and Bowman, J.L.
  Auxin produced by the indole-3-pyruvic acid pathway regulates development and gemmae dormancy in the liverwort Marchantia polymorpha.
  Plant Cell, 27: 1650-1669. [Journal Link]
• Kato, H., Ishizaki, K., Kouno, M., Shirakawa, M., Bowman, J.L., Nishihama, R. and Kohchi, T.
  Auxin-mediated transcriptional system with a minimal set of components is critical for morphogenesis through the life cycle in Marchantia polymorpha.
  PLoS Genet. 11:e1005084. [Journal Link]
• Kageyama, A., Ishizaki, K., Kohchi, T., Matsuura, H. and Takahashi, K.
  Abscisic acid induces biosynthesis of bisbibenzyls and tolerance to UV-C in the liverwort Marchantia polymorpha.
  Phytochemistry 117: 547-553. [Journal Link]
• Kawashima, T., Lorkovic, Z.J., Nishihama, R., Ishizaki, K., Axelsson, E., Yelagandula, R., Kohchi, T. and Berger, F.
  Diversification of histone H2A variants during plant evolution.
  Trends in Plant Science 20: 419-425. [Journal Link]
• Ohnishi, M., Kadohana, N., Suzuki, Y., Kajiyama, T., Shichijo, C., Ishizaki, K., Fukaki, H., Iida, H., Kambara, H. and Mimura, T.
  Involvement of Ca2+ in vacuole degradation caused by a rapid temperature decrease in Saintpaulia palisade cells: a case of gene expression analysis in a specialized small tissue.
  Plant Cell Physiol. 56: 1297-1305. [Journal Link]
• Anegawa, A., Ohnishi, M., Takagi, D., Miyake, C., Shichijo, C., Ishizaki, K., Fukaki, H. and Mimura, T.
  Altered levels of primary metabolites in response to exogenous indole-3-acetic acid in wild type and auxin signaling mutants of Arabidopsis thaliana: A capillary electrophoresis-mass spectrometry analysis.
  Plant Biotechnol. 32: 65-79. [Journal Link]
• Yamamoto, Y., Ohshika, J., Takahashi, T., Ishizaki, K., Kohchi, T., Matsuura, H. and Takahashi, K.
  Functional analysis of allene oxide cyclase, MpAOC, in the liverwort Marchantia polymorpha.
  Phytochemistry 116: 48-56. [Journal Link]
• Nishihama, R., Ishizaki, K., Hosaka, M., Matsuda, Y., Kubota, A. and Kohchi, T
  Phytochrome-mediated regulation of cell division and growth during regeneration and sporeling development in the liverwort Marchantia polymorpha.
  J. Plant Res. 128: 407-421. [Journal Link]
• Lind, C., Dreyer, I., López-Sanjurjo, E.J., von Meyer, K., Ishizaki, K., Kohchi, T., Lang, D., Zhao, Y., Kreuzer, I., Al-Rasheid, K.A.S., Ronne, H., Reski, R., Zhu, J.K., Geiger, D. and Hedrich, R.
  Stomatal guard cells co-optedan ancient ABA-dependent desiccation survival system to regulate stomatal closure.
  Current Biol. 25: 928-935. [Journal Link]

[2014]
• Komatsu, A., Terai, M., Ishizaki, K., Suetsugu, N., Tsuboi, H., Nishihama, R., Yamato K.T., Wada, M. and Kohchi, T.
  Phototropin encoded by a single-copy gene mediates chloroplast photorelocation movements in the liverwort Marchantia polymorpha L.
  Plant Physiol. 166: 411-427.[Journal Link]
• Kubota, A., Kita, S., Ishizaki, K., Nishihama, R., Yamato K.T. and Kohchi, T.
  Co-option of a photoperiodic growth phase transition system during land plant evolution.
  Nature Communications 5: 3668.[Journal Link]
• Kihara, H., Tanaka, M., Yamato, K.T., Horibara, A., Yamada, A., Kita, S., Ishizaki, K., Kajikawa, M., Fukuzawa, H., Kohchi, T., Akakabe, Y. and Matsui, K.
  Arachidonic acid-dependent carbon-eight volatile synthesis from wounded liverwort (Marchantia polymorpha)
  Phytochemistry 107: 42-49. [Journal Link]
• Althoff, F., Kopischke, S., Zobell, O., Ide, K., Ishizaki, K., Kohchi, T. and Zachgo, S.
  Comparison of the MpEF1a and CaMV35 promoters for application in Marchantia polymorpha overexpression studies.
  Transgenic Res. 23: 235-244.[Journal Link]
• 石崎公庸、河内孝之
  E3ユビキチンリガーゼが関与する植物の細胞間隙形成
  生化学　第86巻第4号: 508-512 [Journal Link]

[2013]
• Ishizaki, K., Mizutani, M., Shimamura, M., Masuda, A., Nishihama, R. and Kohchi, T.
  Essential role of the E3 ubiquitin ligase NOPPERABO1 in schizogenous intercellular space formation in the liverwort Marchantia polymorpha.
  Plant Cell 25: 4075-4084.[Journal Link]
• Ueda, M., Takami, T., Peng, L., Ishizaki, K., Kohchi, T., Shikanai, T. and Nishimura, Y.
  Subfunctionalization of sigma factors during the evolution of land plants based on mutant analysis of liverwort (Marchantia polymorpha L.) MpSIG1.
  Genome Biol. Evol. 5: 1836-1848. [Journal Link]
• Kanazawa, T., Ishizaki, K., Kohchi, T., Hanaoka, M. and Tanaka, K.
  Characterization of four nuclear-encoded plastid RNA polymerase sigma factor genes in the liverwort Marchantia polymorpha: Blue-light and multiple-stress responsive SIG5 was acquired early in the emergence of terrestrial plants.
  Plant Cell Physiol. 54: 1736-1748. [Journal Link]
• Ishizaki, K., Johzuka-Hisatomi, Y., Ishida, S., Iida, S. and Kohchi, T.
  Homologous recombination-mediated gene targeting in the liverwort Marchantia polymorpha L.
  Scientific Reports, 3: 1532, doi: 10.1038/srep01532 [Journal Link]
• *Kubota, A., *Ishizaki, K., Hosaka, M., and Kohchi, T.
  Efficient Agrobacterium-mediated transformation of the liverwort Marchantia polymorpha using regenerating thalli.
  Biosci. Biotechnol. Biochem. 77, 167-172. [PubMed Link]
  *These authors contributed equally to this work.
  **日本農芸化学会　2013年BBB論文賞受賞論文、詳細はこちらを参照してください。
• Ogasawara, Y., Ishizaki, K., Kohchi, T., and Kodama, Y.
  Cold-induced organelle relocation in the liverwort Marchantia polymorpha L.
  Plant Cell Environ. 36, 1520-1528. doi: 10.1111/pce.12085. [PubMed Link]
• 石崎公庸、井上佳祐、河内孝之
  基部陸上植物の光応答戦略−フィトクロムを介した光形態形成の分子機構−
  植物科学の最前線　第4巻「光合成生物の多様な光応答戦略」: 37-44 [Journal Link]

[2012]
• Ueda, M., Kuniyoshi, T., Yamamoto, H., Sugimoto K., Ishizaki, K., Kohchi, T., Nishimura, Y., and Shikanai, T.
  Composition and physiological function of the chloroplast NADH dehydrogenase-like complex in Marchantia polymorpha
  Plant J. 72, 683-693 [PubMed Link]
• Ishizaki, K., Nonomura, M., Kato, H., Yamato, K. T., and Kohchi, T.
  Visualization of auxin-mediated transcriptional activation using a common auxin-responsive reporter system in the liverwort Marchantia polymorpha
  J. Plant Res. 125, 643-651.[PubMed Link]
  *2013年度 JPR論文賞 Best Paper Award受賞論文、詳細はこちらを参照してください。
• Okumura, M., Inoue, S. I., Takahashi, K., Ishizaki, K., Kohchi, T., Kinoshita, T.
  Characterization of the plasma membrane H+-ATPase in the liverwort Marchantia polymorpha
  Plant Physiol. 159, 826-834. [PubMed Link]
• 河内孝之、石崎公庸
  古くて新しいモデル植物としてのタイ類ゼニゴケの特徴
  植物科学の最前線　第3巻「古くて新しいモデル植物ゼニゴケ ~陸上植物の多様性・普遍性の分子基盤を探る~」: 58-70 [Journal Link]
• 石崎公庸、河内孝之
  生物材料インデックス「ゼニゴケ」
  生物工学会誌、第90巻: 600-603 [PDF]

[2011]
• Araujo, W.L., Ishizaki, K., Nunes-Nesi, A., Tohge, T., Larson, T.R., Krahnert, I., Balbo, I., Witt, S., Dormann, P., Graham, I.A., Leaver, C.J. and Fernie, A.R.
  Analysis of a range of catabolic mutants provides evidence that phytanoyl-CoA does not act as a substrate of the ETF/ETFQO complex in Arabidopsis thaliana during dark induced senescence.
  Plant Physiol. 157, 55-59 [PubMed Link]
• Araujo, W.L., Tohge, T., Ishizaki, K., Leaver, C.J. and Fernie, A.R.
  Protein degradation – an alternative respiratory substrate for stressed plants –
  Trends Plant Sci. 16, 489-498 [PubMed Link]

[2010]
• *Araujo, W.L., *Ishizaki, K., Nunes-Nesi, A., Larson, T.R., Tohge, T., Krahnert, I., Witt, S., Obata, T., Schauer, N., Graham, I.A., Leaver, C.J. and Fernie, A.R.
  Identification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondria
  Plant Cell, 22, 1549-1563 [PubMed Link]
  *These authors contributed equally to this work.
• Tougane, K., Komatsu, K., Bhyan, S.B., Sakata, Y., Ishizaki, K., Yamato, K.T., Kohchi, T. and Takezawa, D.
  Evolutionarily conserved regulatory mechanisms of abscisic acid signaling in land plants: characterization of ABSCISIC ACID INSENSITIVE1-like type 2C protein phosphatase in the liverwort Marchantia polymorpha
  Plant Physiol., 152, 1529-1543 [PubMed Link]

[2009]
• Era, A., Tominaga, M., Ebine, K., Awai, C., Saito, C., Ishizaki, K., Yamato, K.T., Kohchi, T., Nakano, A. and Ueda, T.
  Application of Lifeact reveals F-actin dynamics in Arabidopsis thaliana and the liverwort, Marchantia polymorpha
  Plant Cell Physiol., 50, 1041-1048 [PubMed Link]
• Ohyama, K., Takemura, M., Oda, K., Fukuzawa, H., Kohchi, T., Nakayama, S., Ishizaki, K., Fujisawa, M. and Yamato, K.T.
  Gene content, organization and molecular evolution of plant organeller genomes and sex chromosomes –Insights from the case of the liverwort Marchantia polymorpha-
  Proc. Jpn. Acad. Ser. B, 85, 108-124 [PubMed Link]
• 石崎公庸、河内孝之
  アグロバクテリウムによるゼニゴケ核ゲノム形質転換法
  低温科学、第67巻「光合成研究法」: 597-600 [PDF]
• 大和勝幸、石崎公庸、河内孝之
  ゼニゴケの培養法
  低温科学、第67巻「光合成研究法」: 23-29 [PDF]

[2008]
• Ishizaki, K., Chiyoda, S., Yamato, K.T. and Kohchi, T.
  Agrobacterium-mediated transformation of the haploid liverwort Marchantia polymorpha L., an emerging model for plant biology.
  Plant Cell Physiol., 49. 1084-1091. [PubMed Link]
• *Chiyoda, S., *Ishizaki, K., Kataoka, H., Yamato, K.T. and Kohchi, T.
  Direct transformation of the liverwort Marchantia polymorpha L. by particle bombardment using immature thalli developing from spores.
  Plant Cell Rep., 27, 1467-1473. [PubMed Link]
  *These authors contributed equally to this work.

[2007]
• Yamato, K.T., Ishizaki, K., Fujisawa, M., Okada, S., Nakayama, S., Fujishita, M., Bando, H., Yodoya, K., Hayashi, K., Bando, T., Hasumi, A., Nishio, T., Sakata, R., Yamamoto, M., Yamaki, A., Kajikawa, M., Yamano, T., Nishide, T., Choi, S-H., Shimizu-Ueda, Y., Hanajiri, T., Sakaida, M., Kono, K., Takenaka, M., Yamaoka, S., Kuriyama, C., Kohzu, Y., Nishida, H., Brennicke, A., Shin-I, T., Kohara, Y., Kohchi, T., Fukuzawa, H. and Ohyama, K.
  Gene organization of the liverwort Y chromosome reveals distinct sex chromosome evolution in a haploid system.
  Proc. Natl. Acad. Sci. USA, 104, 6472-6477. [PubMed Link]

[2006]
• Ishizaki, K., Schauer, N., Larson, T.R., Graham, I.A., Fernie, A.R. and Leaver, C.J.
  The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in prolonged darkness.
  Plant J., 47, 751-760. [PubMed Link]

[2005]
• Ishizaki, K., Larson, T.R., Schauer, N., Fernie, A.R., Graham, I.A. and Leaver, C.J.
  The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidereductase during dark-induced starvation.
  Plant Cell, 17, 2587-2600. [PubMed Link]
• Buchanan-Wollaston, V., Page, T., Harrison, E., Breeze, E., Lim, P.O., Nam, H.G., Lin, J., Wu, S., Swidzinski, J., Ishizaki, K. and Leaver, C.J.
  Comparative transcriptome analysis reveals significant differences in gene expression and signaling pathways between developmental and dark/starvation induced senescence in Arabidopsis.
  Plant J., 42, 567-585. [PubMed Link]

[2003]
• Fujisawa, M., Nakayama, S., Nishio, M., Fujishita, M., Hayashi, K., Ishizaki, K., Kajikawa, M., Yamato, K.T., Fukuzawa, H. and Ohyama, K.
  Evolution of ribosomal DNA unit on the X chromosome independent of autosomal units in the liverwort Marchantia polymorpha
  Chromosome Research, 11, 695-703 [PubMed Link]

[2002]
• Ishizaki, K., Shimizu-Ueda, Y., Okada, S., Yamamoto, M., Fujisawa, M., Yamato, K.T., Fukuzawa, H. and Ohyama, K.
  Multicopy genes uniquely amplified in the Y chromosome-specific repeats of the liverwort, Marchantia polymorpha
  Nucleic Acids Res,, 30, 4675-4681 [PubMed Link]

[2001]
• Okada, S., Sone, T., Fujisawa, M., Nakayama, S., Takenaka, M., Ishizaki, K., Shimizu-Ueda, Y., Hanajiri, T., Yamato, K.T., Fukuzawa, H., Brennicke, A. and Ohyama, K.
  The Y chromosome in the liverwort Marchantia polymorpha has accumulated unique repeat sequences harboring a male-specific gene.
  Proc. Natl. Acad. Sci. USA, 98, 9454-9459 [Journal Link]
• Fukuzawa, H., Miura, K., Ishizaki, K., Kucho, K., Saito, T., Kohinata, T. and Ohyama, K.
  Ccm1, a regulatory gene controlling the induction of a carbon-concentrating mechanism in Chlamydomonas reinhardtii by sensing CO2 availability.
  Proc. Natl. Acad. Sci. USA, 98, 5347-5352. [PubMed Link]

[1998]
• Fukuzawa, H., Ishizaki, K., Miura, K., Matsueda, S., Ino-ue, T., Kucho, K. and Ohyama, K.
  Isolation and characterization of high CO2-requiring mutants from Chlamydomonas reinhardtii by gene tagging.
  Can. J. Bot. 76, 1-6. [Journal Link]

[参考になる総説等]
• 石崎公庸、榊原恵子
  巻頭言：古い酒を新しい革袋に〜preexisting gene regulatory networkの転用による陸上植物のボディプラン革新〜−
  植物科学の最前線　第7巻「古い酒を新しい革袋に〜preexisting gene regulatory networkの転用による陸上植物のボディプラン革新」: 37-44 (2016)[Journal Link]
• 石崎公庸、井上佳祐、河内孝之
  基部陸上植物の光応答戦略−フィトクロムを介した光形態形成の分子機構−
  植物科学の最前線　第4巻「光合成生物の多様な光応答戦略」: 37-44 (2013)[Journal Link]
• 河内孝之、石崎公庸
  古くて新しいモデル植物としてのタイ類ゼニゴケの特徴
  植物科学の最前線　第3巻「古くて新しいモデル植物ゼニゴケ ~陸上植物の多様性・普遍性の分子基盤を探る~」: 58-70 (2012)[Journal Link]
• 石崎公庸、河内孝之
  生物材料インデックス「ゼニゴケ」
  生物工学会誌、第90巻: 600-603 (2012)[PDF]
• Araujo, W.L., Tohge, T., Ishizaki, K., Leaver, C.J. and Fernie, A.R.
  Protein degradation – an alternative respiratory substrate for stressed plants –
  Trends Plant Sci. 16, 489-498 (2011)[PubMed Link]
• 石崎公庸、河内孝之
  アグロバクテリウムによるゼニゴケ核ゲノム形質転換法
  低温科学、第67巻「光合成研究法」: 597-600 [PDF]
• 大和勝幸、石崎公庸、河内孝之
  ゼニゴケの培養法
  低温科学、第67巻「光合成研究法」: 23-29 [PDF]